test(python): align SDK runtime snapshots with desktop composition

Record the six added default SDK tools in the dynamic-tool history. Keep the existing custom snapshot, recovery, and restart compositions independent of the desktop defaults using the same disabled rows as the TypeScript legacy context patch. Validate the original failure and the following scenarios through the supported built CLI path.

scripts/smoke-python-runtime.py

@@ -75,17 +75,24 @@ SPAWN_NODE_COMMAND = (
 )
 LEGACY_CUSTOM_DISABLED_ROWS = (
     "agent-instructions",
+    "deliverable-file-references",
+    "file-reference-local",
     "goal",
     "goal-round-driver",
     "command-goal",
     "plan-mode",
+    "present",
+    "harness-dev-context",
     "skill",
     "skill-filesystem",
     "skill-office",
     "workspace-dependencies",
+    "time-context",
+    "tool-ask-user",
     "tool-fs",
     "tool-fs-search",
     "tool-goal",
+    "tool-schedule",
     "tool-skill",
     "tool-str-replace-editor",
     "tool-subagent-control",