diff --git a/scripts/smoke-python-runtime.py b/scripts/smoke-python-runtime.py
index 19158aa9f5..611622b9e4 100644
--- a/scripts/smoke-python-runtime.py
+++ b/scripts/smoke-python-runtime.py
@@ -75,17 +75,24 @@ SPAWN_NODE_COMMAND = (
 )
 LEGACY_CUSTOM_DISABLED_ROWS = (
     "agent-instructions",
+    "deliverable-file-references",
+    "file-reference-local",
     "goal",
     "goal-round-driver",
     "command-goal",
     "plan-mode",
+    "present",
+    "harness-dev-context",
     "skill",
     "skill-filesystem",
     "skill-office",
     "workspace-dependencies",
+    "time-context",
+    "tool-ask-user",
     "tool-fs",
     "tool-fs-search",
     "tool-goal",
+    "tool-schedule",
     "tool-skill",
     "tool-str-replace-editor",
     "tool-subagent-control",
diff --git a/scripts/snapshots/python-sdk-single-exe/dynamic-tools/tool-history.json b/scripts/snapshots/python-sdk-single-exe/dynamic-tools/tool-history.json
index d93f0c33c1..212f27dca1 100644
--- a/scripts/snapshots/python-sdk-single-exe/dynamic-tools/tool-history.json
+++ b/scripts/snapshots/python-sdk-single-exe/dynamic-tools/tool-history.json
@@ -30,7 +30,7 @@
   "events": [
     {
       "type": "request/header",
-      "seq": 11,
+      "seq": 12,
       "time": 0,
       "data": {
         "header": {
@@ -45,6 +45,7 @@
             "maxTokens": true
           },
           "tools": [
+            "ask_user_question",
             "create_goal",
             "edit",
             "exit_plan_mode",
@@ -56,8 +57,13 @@
             "job_list",
             "job_output",
             "list_agents",
+            "present",
             "read",
             "read_image",
+            "schedule_create",
+            "schedule_delete",
+            "schedule_list",
+            "schedule_update",
             "send_message",
             "skill",
             "subagent",
@@ -76,7 +82,7 @@
     },
     {
       "type": "request/context",
-      "seq": 12,
+      "seq": 13,
       "time": 0,
       "data": {
         "provider": "deepseek-official",
@@ -86,7 +92,7 @@
     },
     {
       "type": "request/header",
-      "seq": 19,
+      "seq": 20,
       "time": 0,
       "data": {
         "header": {
@@ -101,6 +107,7 @@
             "maxTokens": true
           },
           "tools": [
+            "ask_user_question",
             "create_goal",
             "edit",
             "exit_plan_mode",
@@ -112,8 +119,13 @@
             "job_list",
             "job_output",
             "list_agents",
+            "present",
             "read",
             "read_image",
+            "schedule_create",
+            "schedule_delete",
+            "schedule_list",
+            "schedule_update",
             "send_message",
             "skill",
             "snapshot_ping",
@@ -133,7 +145,7 @@
     },
     {
       "type": "developer/message",
-      "seq": 20,
+      "seq": 21,
       "time": 0,
       "data": {
         "turn": 1,
@@ -157,7 +169,7 @@
     },
     {
       "type": "request/header",
-      "seq": 26,
+      "seq": 27,
       "time": 0,
       "data": {
         "header": {
@@ -172,6 +184,7 @@
             "maxTokens": true
           },
           "tools": [
+            "ask_user_question",
             "create_goal",
             "edit",
             "exit_plan_mode",
@@ -183,8 +196,13 @@
             "job_list",
             "job_output",
             "list_agents",
+            "present",
             "read",
             "read_image",
+            "schedule_create",
+            "schedule_delete",
+            "schedule_list",
+            "schedule_update",
             "send_message",
             "skill",
             "subagent",
@@ -203,7 +221,7 @@
     },
     {
       "type": "developer/message",
-      "seq": 27,
+      "seq": 28,
       "time": 0,
       "data": {
         "turn": 1,